Hi Tyson, I see 4 pages of posts telling you tune is bad and turbo is out of adjustment, but didn't see you comment about quality of smoke??
What is IQ at idle hot? How about posting or sending your tuner a vaglog of 001, 004, and 011 for a good 3rd gear pull.
Often times I get cars with severe underfueling. Nozzles are not actually what they thought they bought, and turbos bark like mad cuz there is nothing there to push the hot side, when the cold side is requesting more. You end up with a clogged exhaust (vnt requesting more energy that fuel can deliver) and a barking turbo. Have you driven it with maf unhooked, any differences? Under-reporting maf can make car run lean, as well as bad/under-reporting CTS. These problems are easy to spot in your vaglogs.
At your higher elevation I would expect your car would smoke heavy at 22psi with pp764's.
JFettig eluded to your problem it in post 53 about exhaust energy!
Jeff