Thank you all for replying to my post, i really appreciate your time and effort.
It seems the consensus are focusing on the drive shafts, specificly the CV Joints and I will concantrate my search for the problem in this area. In addition should i be suspicious of the struts or their componants.
I just got our car's noise issue resolved and wanted to post back in case anyone else has a similar problem. I had sourced axles from RockAuto.com made by SurTrack but they turned out to be complete garbage made in China. My mechanic attempted to install them but found that they were improperly ground / sized wrong (both left and right axles but wrong in different ways from one side to the other). They went back and we got our money back. Checking all local autoparts we came up empty for axles for the 06 TDI. The dealer has them but I forget the price they quoted me- it would have been funny if we didn't really need them.
I had come across another couple posts on TDIclub while researching this problem and had found references to Raxles.com
I called Marty at Raxles and ended up buying from him. When you talk to Marty (even the first time you EVER talked to him) he makes you feel like you have a friend in the business. The order arrived here in 4 days from FL (to PA) and he even included the tools necessary to do the job (on loan of course- not to keep) but he provided the 27mm socket for the axle bolt plus the triple square drive... new bolts as well
Gee there was even a map to the closest UPS store location to drop the cores to get them back to FL.
The axles have a lifetime warranty- If this sounds like something you are interested in, check it out here
http://www.raxles.com/
I got a similar price from
1st VW Parts for new OEM axles (way cheaper than the dealership) but with the standard 1 year warranty- the originals didn't make 120k mi so to me the lifetime warranty was more attractive