taking boot off the lowest part of the intercooler, drain oil that builds up (probably a bit more than normal from your case (that's fine))
put it back together, take the hard plastic boots off the car completely and put in HOT water and Cascade (LOTS OF CASADE, not dawn or liquid soap, that will casue suds. you want laundry detergent into the pipe that goes to the intercooler. and after a while, flush it with a garden hose
take the lower pipe back off to drain again. if you have a shop vac, use it or a leaf blower to drive as much water out as possible. let it sit overnight if you can't
put it all bac together other than the intake manifold boot (leave this off.
run the car for about 5 minutes like that, will help drive off any more water.
put it back together. let it idle for a few more minutes and do not go WOT for a while until the engine temps get up a bit. you want to minimize the risk of a slug of water going into the engine. if you do it this way, its very unlikely at all.
do not use solvents. this is a diesel engine. you can and will 100% have a small runaway on your hands the moment you fire it up. it will end the moment the solvent has been used.
i used brake cleaner on a rag once to wipe out the silicone fittings for my set up. it ran away for about half a second cold. that's not good. A runaway is an over revving engine out of control