Finally found a laptop that VDS Pro works with. I have a 1C0 959 799C CCM in my 2003 Jetta Wagon, with original values stored in 04361, 04362, and 04363 of 202 (consistent with the values in this post for 2003 Jetta Wagon TDI's:
http://forums.tdiclub.com/showpost.php?p=1553448&postcount=9). I swapped in the Euro wiring to no effect, but then changed those address values to 195 and the hatch (and window rolldown) now works perfect. Thanks so much everyone, especially Chris and MOGolf, for your help!
Ausgezeichnet_TDi, once you've moved to the South Bay I can help you out with this.