No way to filter out the transmission that I see. This is Passat specific only, not 6 Man/DSG.
There is a way to filter, if you take the page source file (right mouse click on page, select "View source") and paste it in Excel, then try to look for "auto", "DSG", "SEL", or "Manual" (Thanks to the people that added these words on their car description!). As today, I can see:
2012
287 diesels (diesel L4, sedan), 151 Auto, 45 Manual, 91 you can't tell
MPG: Auto 38.97, Manual:43.36
2013
514 diesels (diesel L4, sedan), 392 Auto, 126 Manual, 64 you can't tell
MPG: Auto 38.75, Manual:42.36
2014
91 diesels (diesel L4, sedan), 49 Auto, 39 Manual, 3 you can't tell
MPG: Auto 38.57, Manual:40.77
The averages look similar. The oldest models have little better MPG, that might be because the older ones include miles after the engine break-in period, and because some of these miles were logged in warm weather (the 2014 have seen mostly fall and winter so far). Also, from the data we can see that the manual transmission gives 2 to 4 MPG more than the DSG.