only if you sucked in the most humid air possible and left it for months, it might cause issues but the water, and air will boil off in seconds when the shop does it. its contaminants that cause longer vac times. no need to vac it down at all until the shop can do it. if you really cared, you would be purging the system with nitrogen, it dries out things. its logical to think that it might cause damage but it wont. i've been doing HVAC for ages now. i even have my esco Universal if that makes a difference lol
What DOES matter is you want to get a new Filter dryer installed. the one you have is garbage now. the moment air hits it, its trash. they should always be installed with nitrogen purge. all it is, is desiccant to get any contaminates (water) out just incase.
I meant to tell you to do the work with a purge of nitrogen on a cheap HF manifold. BUt filter driers are CHEAP. get one before you take it to them. This is why Lightflyer1 wanted you to vac it down, but the reality is that the damage is done with in seconds of exposure. vacing it down is pointless right now. purging with nitrogen however is useful.
actually if your a CHEAP'O
take the filter dryer out, flush with acetone, let it dry out in the sun. put it in your oven at 150*F for 2 hours. this WILL drive off all moisture. cap off while its hot with some plugs or anything to keep air from rushing in. go to harbor fright, $30 manifold, go to airgas, $40 tank of small nitrogen on rental for $1 a month. purge your entire system with nitrogen and let it flow through the hose slowly as you install the dryer. Or do that same thing with a new dryer!