Well, one obvious and giant difference is there is no I-shaft in the block to have to keep lubricated, so that alone in theory would give them more oil potential to play with, but the entire bottom end is different. The oil passages in the block to the oil filter/cooler housing are substantially larger, and I would not doubt if you took the oil pumps apart, you'd find the later engines have more potential there than even the early engines' later versions (of which all TDIs already had) that came out originally to coincide with the hydraulic lifters that were added in.
This is kind of one of those things like comparing the "old" original Chevrolet small block V8s (and V6s) to the later style engines. The 2000 5.3L V8 is a VAST improvement over the 5.7L it replaced. No contest. And the main reason is, GM wasn't trying to reinvent the wheel. They literally had decades of experience building those old V8s. Many different sizes, but ultimately ended up and stayed with 5.0L and 5.7L engines, and remained so for a good long while (there was a short-lived 4.3L V8 used in some B-body cars that was the exception, but still same basic design). So when a new, clean slate engine was decided upon, but unlike Ford* decided to stick with a simple iron-block 90 degree pushrod 2 valve port injected engine, they could draw upon all those decades and figure out what was good and what was not, and what was needed and what was not. So, just like VAG did with these second generation I4s, useless things like distributor drives or external crank sensors were ditched because they knew that they'd not need it. Makes for a simpler, cleaner, and more refined engine.
*Ford may have finally seen the folly of their ways, because the new 'Godzilla' gasoline V8, a 7.3L beast, is back to... you guessed it... a simple iron-block 90 degree pushrod 2 valve port injected engine, replacing (and easily besting the performance of) the 6.8L 3 valve OHC V10, that debuted in 2 valve form way back in 1997, based on the 5.4L V8, which was itself a stretched 4.6L V8, which dated even further back to the 1991 Lincoln Town Car. So, the all new 7.3L V8 really has more in common with my '97 F250 HD's 7.5L behemoth, which has its roots back somewhere when Volkswagen was only building cars with their engines in the back where they belong.
But I have no doubt that the new engine would embarrass my old truck (at least I get to row my own gears still!).