Didn't solve it, it came back again! Something is loose because if I go over a bump it turns on and off. The only options left are:
1. Replace the boards that the brake and turn signal lights clip into and hope that works
2. Remove the light and find a way to put a resistor in there so it never flickers again
3. Sell car and let someone else deal with it.
It never throws a code so I know it's the brake light system in some way, I know it's none of the connectors because with the car on I fiddled with every one from the pedal switch to the individual bulbs and it didn't change. This problem is driving me insane, I am literally getting agitated every time this light comes on now. I don't like warning lights, I keep my cars in good enough shape that I shouldn't be seeing them, not for something like this.
Anyone want a 98 Jetta TDI? I'm seriously getting tired of this issue. The VW shop tells me it's probably the clockspring which I know is false, I've traced it down to the brake light system because at one point when I pushed the brake pedal down it would go off but then if I let off it would come on again.