IMO the GTB2060VKLR is an amazing turbo on these cars for those not looking to loose low end spool. It was a nice stage 3++ for me prior to everyone putting cr170s on. The GTB2260 is slightly (~100rpm) slower spool than the GTB2060VKLR, but had slightly better upper end. We are still finding the turbo is too small once the fueling system is upgraded (boost creep)! This leaves me to lean to thinking that even a 2260 isn't big enough for these blocks. Ryan's Hybrids, or maybe that 2566 might be moving in the right direction. Optionally, the turbo is sized right, but what is happening is the headflow is making the turbo push air through a straw.
I'd like to see a dyno after the headwork, and will put down my guess of 305whp after this work is done. (this is assuming the tune is adjusted for the rpm and fueling tweaked a bit)
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Transmission wise I had a wavetrack in my 02S... IMO go with a pelequin, I have had both and loved the Pelequin more. Also, Id suggest the to transmission braces that darkside offers. I'm not a huge fan of the wearable bearing design and manual adjustment for the shaft support, but it will save syncros... a ratcheting roller bearing design would be amazing, but not enough people are breaking these to justify that complicated of a design.