In my experiance on a dirty system the brake fluid needs to be changed a 2nd time after a week of driving. New clean fluid tends to clean more than what just came out.
You can pop the resiviour off and clean it with brake parts cleaner and let it dry. If you are carefull you wont add issues to the master.
Going with a vac or pressure bleed you need to pump the pedal at least a few times on one of the bleeds. This gets the remaining bits out of the master that otherwise cant leave.
You dont have to but it's good if you cycle the abs pump with vcds.