The subframes all have different part numbers, so they are not the same. ETKA lists four different ones for the North American B4: VR6 manual, VR6 automatic, 4 cyl (gas or diesel) manual, and 4 cyl automatic (which for us was only the ABA gas).
What specifically is different, I do not know. The front carrier is also a different part number. The VR6 cars also have different control arms, and they are L/R. All the 4 cyl cars use a different arm, and they are the same L/R.
From what I remember, the B3, B4, A3, and Corrado (which was mostly A2) VR6 cars had to get different suspension geometry for caster to make them handle correctly. Which makes sense. Because not only is the VR6 lump substantially HEAVIER than any of the 4 cyl engines, but it is also canted FORWARD for some reason, instead of the 15 degree rearward slant of the 4 cyl engines. That nose heavy attribute, which admittedly is the least pronounced in the larger Passats, is still there. VR6 A3 Golfs are actually not that great to drive in twisting turning conditions. They handle pretty poorly, really.