The BEW has 10hp more, and 22tq more, than the ALH. I am not really sure the bottom end is any "stronger". It technically should be, since it has the newer type cracked rods whereas the ALH just uses the same old fashioned 028 style rods carried over from the ancient AHU, but experience has shown us that ALHs rarely ever have bottom end issues... even when making double the original output... and several BEWs have thrown rods... even in stock form. So... ????
I'm of the camp that thinks the trouble to convert the car isn't worth any potential gains in any area. I like the BEW just fine, and despite some people's ramblings, the camshafts can live a long, happy life just fine (I have one getting ready for timing belt change #4, at 400k miles, and its valve cover has never been off).
So here's the deal if you still insist on doing it: you have both cars, and fortunately the ALH car is a later one so it will have the most in common with the BEW car. So basically take them both apart, and change what you find is different. That is a fairly basic simplified explanation, but I do not think you are going to find any step-by-step itemized pinpoint list, because people just don't bother to do what you want to do.