Well, normally, nozzles get installed into injector bodies and pop-tested, flow matched, etc. I'd never just swap over nozzles and shove them in the old injector bodies and put them back in the engine. Some people have done that, though. I wouldn't, nor would I recommend it.
Plus, since you are really going after an issue here, which is the kernel of your concern, you really should have the injectors TESTED as they are FIRST, to see what condition they are in right now. Our diesel shop (as most of them) will work with you to verify if your concern is indeed something with the injectors (of which, the nozzle is part of) or perhaps something else. And most of these shops will bench test them for free.
You could have other issues, still.