The reason they want all the pistons evenly below the deck is to make sure that valves don't hit pistons upon installation, as many head installs happen with the cam installed - which would have at least a couple valves open - valves which could hit pistons if the cam and crank are not already lined up when the head is lowered onto the block.
a couple of things here, and a note on this as he says^ for the head install, cam is also in. even w/o cam 'currently' in (head), when you go to put cam in, and the steps involved, if #1 is @TDC when cam is put in, you come up on the same problem. if in this case #1 is @/near TDC, if cam is in,being put in, its something like 4 total valves in some stage of opening(even if as cam/engine rotates it may continue to close), the most important one, in this case, will usually be
both (valves) of #4, as its at the top of cyl, getting ready for an intake run/stroke, in this exhaust +intake are now cycling @valve over-lap. if theres any question here, of space, there will be no 'cushion' and esp.as you run/tighten nuts/bolts/fasteners, the #1 thing to go will be where there is no space at a valve(s), a lifter (that one) will go with it, the cam can take a hit, oh if your installing that cam you can lose one of those cam/head block halves, generally if that happens expect the trash to soon handle the head its self. so turning those pistons back (1/2 way) will save you this. when you in the final stages, later now rotate crank forward to start timing you will now find out if that clearance is ok, if you do it right you ll end up losing nothing until you do it again, and hopefully get it correct. in saying such After final 1st set of mechanical timing, you will not rotate crank over 2x full times, can make girls out of big men, so dont back down.
. this verifys all mechanicals have clearance, and you should be just about ready. thats a ways off, but still.
. gl