You need a new HPFP.
I would also replace the in-tank lift pump, remove the rail and all the pipes on the engine, take the rail pressure regulator off the one end of the rail, and take the rail pressure sensor off the other end. Clean it all VERY thoroughly with brake cleaner and lots of compressed air. Replace the rail pressure regulator and rail pressure sensor. The new pump will come with the metering valve.
Blow the lines to and from the tank and filter assembly out thoroughly. I do not think the CKRA has the little strainer in the plastic bulb on the HPFP inlet side, I cannot remember. If it does, replace that too.
Clean out all the hoses under the hood, one at a time, individually. I would also get the injector return hose assembly as there is a little check valve in there. You *may* still need injectors, but hopefully not.
Install a new filter, prime it, get it going again, then after a few minutes, put a new filter in again, and suck out anything that collected at the bottom of the filter canister.