Due to weather and a high level of frustration I've been unable to work on this project and so the problem is still unresolved. Thanks KERMA for your recent input; I'll follow through on your suggestions. I have tested the lift pump and the flow seems up to specs. Would this be affected by temperature? Also, when I say NO throttle response I mean absolutely NOTHING; as if it's not even connected.
So this is the current situation when I try to start it:
The cold car starts immediately but starts at a low rough idle, around 450 rpm, which increases to around 950 rpm over a couple of seconds at which point the engine usually shuts down. After a few tries like this instead of shutting down completely it will catch itself and idle very roughly at 450-500 rpm. At this point there is no throttle response (VCDS shows the TPS operating properly), the timing is at 13-14 BTDC, the Specified MAF (SMAF) is 650-850 while the Actual MAF (AMAF) is around 450 and the IQ is 33.8.
It will idle in this condition and gradually warm up. As the coolant temp rises the rpm slowly increases and gets smoother. The throttle remains unresponsive and the timing and SMAF are unchanged. When the coolant temp reaches 56-58 C everything changes-
the idle is smooth and stable at 850 rpm, the throttle is responsive, the timing is within normal specs (1.6 BTDC), the SMAF and AMAF are approximately the same in the 250-450 range, and the IQ is 4.7. The engine revs normally to redline and if I shut it down and restart it, the car runs normally.
The only codes on a VCDS Autoscan are related to the missing TCM which should not effect whether the engine runs properly or not. I have tried 3 coolant temp sensors, the last one from the VW dealer with no change. I’m confident that this is not an ECU issue and I’ve tried a different MAF sensor from my friend’s Passat without any change.